Application settings¶
Editing application settings¶
The application settings dialog allows users to customize application behavior.
After starting Slicer, it can be accessed clicking in menu: Edit
/ Application Settings
.
General¶
Application startup script can be used to launch any custom Python code when Slicer application is started.
Modules¶
Skip loading¶
Select which type of modules to not load at startup. It is also possible to start slicer by temporarily disabling those modules (not saved in settings) by passing the arguments in the command line.
For example, this command will start Slicer without any CLI loaded:
Slicer.exe --disable-cli-modules
Prefer Executable CLIs¶
Use the executable version of a CLI instead of its shared version. CLI modules typically come in 2 forms, as shared (dll)and as executable (exe). By default, if there is a shared version, it is the one loaded by Slicer, ignoring the executable version. Loading a shared runs the module faster but increases the memory consumption. For some configurations (e.g. Windows 32b), memory is critical. Toggling this option to ON skips the loading of shared CLIs and loads executable version of CLIs instead. If there is no executable for a given CLI, the shared version is used.
Temporary directory¶
Directory where modules can store their temporary outputs if needed.
Additional module paths¶
List of directories scanned at startup to load additional modules. Any CLI, Loadable or scripted modules located in these paths will be loaded. Extensions are listed in the list, to remove an extension, use the Extensions Manager instead.
It is also possible to start slicer by temporarily adding module paths (not saved in settings) by passing the arguments in the command line.
For example this command will start Slicer trying to load CLIs found in the specified directory:
Slicer.exe --additional-module-paths C:\path\to\lib\Slicer-X.Y\cli-modules
Modules¶
List of modules loaded, ignored or failed to load in Slicer. An unchecked checkbox indicates that module should not be loaded (ignored) next time Slicer starts. A text color code is used to describe the state of each module:
- Black: module successfully loaded in Slicer
- Gray: module not loaded because it has been ignored (unchecked)
- Red: module failed to load. There are multiple reasons why a module can fail to load.
Look at startup log outputs to have more informations. If a module is not loaded in Slicer (ignored or failed), all dependent modules won’t be loaded. You can verify the dependencies of a module in the tooltip of the module.
You can filter the list of modules by untoggling in the advanced (>>) panel the “To Load”, “To Ignore”, “Loaded”, “Ignored” and “Failed” buttons.
Home¶
Module that is shown when Slicer starts up.
Favorites¶
List of modules that appear in the Favorites toolbar:
To add a module, drag&drop it from the Modules list above. Then use the advanced panel (>>) to reorganize/delete the modules within the toolbar.
Appearance¶
Style¶
The overall theme of Slicer is controlled by the selected Style:
- Slicer (default): it sets the style based on theme settings set by the operating system.
For example, on Windows if [dark mode][(https://blogs.windows.com/windowsexperience/2016/08/08/windows-10-tip-personalize-your-pc-by-enabling-the-dark-theme/)]
is turned on for apps, then the
Dark Slicer
style will be used upon launching Slicer. Currently, automatic detection of dark mode is not available on Linux, therefore use needs to manually selectDark Slicer
style for a dark color scheme. - Light Slicer: application window background is bright, regardless of operating system settings.
- Dark Slicer: application window background is dark, regardless of operating system settings.
Information for Advanced Users¶
Settings file location¶
Settings are stored in *.ini files. If the settings file is found in application home directory (within organization name or domain subfolder) then that .ini file is used. This can be used for creating a portable application that contains all software and settings in a relocatable folder. Relative paths in settings files are resolved using the application home directory, and therefore are portable along with the application.
If .ini file is not found in the the application home directory then it is searched in user profile:
- Windows:
%USERPROFILE%\AppData\Roaming\NA-MIC\
(typicallyC:\Users\<your_user_name>\AppData\Roaming\NA-MIC\
) - Linux:
~/.config/NA-MIC/
- Mac:
~/.config/www.na-mic.org/
Deleting the *.ini files restores all the settings to default.
There are two types of settings: user specific settings
and user and revision specific settings
.
User specific settings¶
This file is named Slicer.ini
and it stores settings applying to all versions of Slicer installed by the current user.
To display the exact location of this settings file, open a terminal and type:
./Slicer --settings-path
On Windows:
Slicer.exe --settings-path | more
or enter the following in the Python interactor:
slicer.app.slicerUserSettingsFilePath
User and revision specific settings¶
This file is named like Slicer-<REVISION>.ini
and it stores settings applying to a specific revision of Slicer installed by the current user.
To display the exact location of this settings file, enter the following in the Python interactor:
slicer.app.slicerRevisionUserSettingsFilePath
Application startup file¶
Each time Slicer starts, it will look up for a startup script file named .slicerrc.py
. Content of this file is executed automatically at each startup of Slicer.
The file is searched at multiple location and the first one that is found is used. Searched locations:
- Application home folder (
slicer.app.slicerHome
) - Path defined in
SLICERRC
environment variable - User profile folder (
~/.slicerrc.py
)
You can find the path to the startup script in Slicer by opening in the menu: Edit / Application Settings. ‘’Application startup script’’ path is shown in the ‘’General’’ section (or running getSlicerRCFileName()
command in Slicer Python console).
Runtime environment variables¶
The following environment variables can be set before the application is started to fine-tune its behavior:
PYTHONNOUSERSITE
: if it is set to1
then import of user site packages is disabled.QT_ENABLE_HIGHDPI_SCALING
: see Qt documentationQT_SCALE_FACTOR_ROUNDING_POLICY
: see Qt documentationQTWEBENGINE_REMOTE_DEBUGGING
: port number for Qt webengine remote debugger. Default value is1337
.SLICER_OPENGL_PROFILE
: Requested OpenGL profile. Valid values areno
(no profile),core
(core profile), andcompatibility
(compatiblity profile). Default value iscompatibility
on Windows systems.SLICER_BACKGROUND_THREAD_PRIORITY
: Set priority for background processing tasks. On Linux, it may affect the entire process priority. An integer value is expected, default =20
on Linux and macOS, and-1
on Windows.SLICERRC
: Custom application startup file path. Contains a full path to a Python script. By default it is~/.slicerrc.py
(where ~ is the user profile a.k.a user home folder).